Publications

Research Articles

  1. Huang Q, Yang Y., Tolstikov V., Kiebish M.A. Ludvigsson JF,  Palm NW,  Ludvigsson J,  Altindis E*. Children Developing Celiac Disease Have a Distinct and Proinflammatory Gut Microbiota in the First 5 Years of Life. BioRxiv. doi: https://doi.org/10.1101/2020.02.29.971242 * Corresponding author (under review)
  2. Altindis E, Cai W, Sakaguchi M, Zhang F, Guoxiao W, Liu F, Gelfanov V, De Meyts P, DiMarchi R and Kahn CR. Viral insulin-like peptides activate human insulin and IGF-1 receptor signaling: A paradigm shift for host-microbe interactions. PNAS, 2018 Mar 6;115 (10):2461-2466.
  3. Fujisaka S., Pacheco JA., Soto M., Kostic Aleksandar, Dreyfuss JM., Pan H., Ussar S., Altindis E., Li N., Bry L., Clish CB., and Kahn CR. Diet, genetics and gut microbiome drive dynamic changes in plasma metabolites. Cell Rep. 2018 Mar 13;22 (11):3072-3086.
  4.  Fujisaka S, Ussar S, Clish C, Devkota S, Dreyfuss J, Sakaguchi M, Konishi M, Softic S, Altindis E et al. Antibiotic Modification of Gut Microbiota Improves Insulin Signaling Via Effects on Bile Acids Depending on Host Genetics. J Clin Invest., 2016 Dec 1;126 (12):4430-4443.
  5. Altindis E*, Dong T*, Catalano J, Mekalanos JJ. Secretome analysis of Vibrio cholerae Type VI Secretion System reveals a new effector-immunity pair.  mBio, 2015 Mar 10;6 (2):e00075. * equal contribution
  6. Altindis E, Cozzi R, Di Palo B, Neccho F, Mishra PR., Fontana MR, Soriani M, Bagnoli F, Maione D, Grandi G, Liberatori S. Protectome analysis: a new selective bioinformatics tool for bacterial vaccine candidate discovery. Mol Cell Proteomics, 2015 Feb;14 (2):418-29.
  7. Altindis E, Fu Y, Mekalanos JJ. Proteomic analysis of the Vibrio cholerae outer membrane vesicles. PNAS, 2014 Apr 15;111 (15):E1548-56.
  8. Mishra R, Mariotti P, Fiaschi L., Nosari S,, Maccari S., Liberatori S, Fontana M R, Pezzicoli A, Falugi F, Altindis E et al.  . Staphylococcus aureus FhuD2 is involved in the early phase of staphylococcal dissemination and generates protective immunity in mice. J Infect Dis, 2012 Oct 1;206 (7):1041-9, 2012.
  9. Doro F, Liberatori S, Rodríguez-Ortega MJ, Rinaudo CD, Rosini R, Mora M, Scarselli M, Altindis E et al.  Surfome analysis as a fast track to vaccine discovery: identification of a novel protective antigen for Group B Streptococcus hypervirulent strain COH1. Mol Cell Proteomics, 2009 Jul; 8 (7):1728-37.
  10. Altindis E, Tefon BE, Yildirim V, Ozcengiz E, Becher D, Hecker M, Ozcengiz G. Immunoproteomic analysis of Bordetella pertussis and identification of new immunogenic proteins. Vaccine, 2009 Jan 22; 27 (4):542-8.

Research Articles in Preparation (2020)

1. Altindis E et al. Gut Microbiota Regulate Pancreas Function and Growth in Mice and Humans https://diabetes.diabetesjournals.org/content/68/Supplement_1/187-OR?utm_source=TrendMD&utm_medium=cpc&utm_campaign=Diabetes_TrendMD_0

2.  Altindis E et al. Identification of Cross Reactive Insulin Immunogenic Epitopes from Commensal Gut Microbes http://diabetes.diabetesjournals.org/content/67/Supplement_1/95-OR

3. Altindis E* and Garcia R.* et al. Characterization of the Small Extracellular Vesicle Proteins and Their Potential as Regulators of Systemic Metabolism and Disease Biomarkers  http://diabetes.diabetesjournals.org/content/67/Supplement_1/354-OR  

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Reviews, Chapters and Monographs

  1. Dedrick S., Sundaresh B., Huang Q., Brady C., Yoo T., Cronin C., Rudnicki C., Flood M., Momeni B., Ludvigsson J., Altindis E.*  The Role of Gut Microbiota and Environmental Factors in Type 1 Diabetes Pathogenesis. Front Endocrinol (Lausanne). 2020 Feb 26;11:78. * Corresponding author
  2. Huang Q., Kahn C.R., Altindis E.* Viral Hormones: Expanding Dimensions in Endocrinology. Endocrinology, 2019, Volume 160, Issue 9, September, 2165–2179. * Corresponding author
  3. Altindis E. Antibacterial Vaccine Research in 21st Century: From Inoculation to Genomics Approaches. Current Topics in Medicinal Chemistry, 2013 October v13:20
  4. Altindis E, Izulla P.  An overview of African health: this time for Africa? Building on 2010 FIFA World Cup success. Expert Rev Anti Infect Ther, 2010 Dec; 8(12):1325-8.
  5. Altindis E. Vaccines for all: Institut Pasteur vaccinology course. Expert Rev Vaccines, 2010 Sep; 9(9):1023-6.
  6. Altindis E, Gulce Iz S, Ozgun Ozen M, Nartop P, Deliloglu Gurhan I, Gurel A. Plant Derived Edible Vaccines and Therapeutics. Frontiers in Clinical Drug Research-Anti-Infectives, 2014, ISBN: 978-1-60805-855.

In preparation

1. Altindis E et al. Gut Microbiota Regulate Pancreas Function and Growth in Mice and Humans https://diabetes.diabetesjournals.org/content/68/Supplement_1/187-OR?utm_source=TrendMD&utm_medium=cpc&utm_campaign=Diabetes_TrendMD_0

2.  Altindis E et al. Identification of Cross Reactive Insulin Immunogenic Epitopes from Commensal Gut Microbes http://diabetes.diabetesjournals.org/content/67/Supplement_1/95-OR

3. Altindis E* and Garcia R.* et al. Characterization of the Small Extracellular Vesicle Proteins and Their Potential as Regulators of Systemic Metabolism and Disease Biomarkers  http://diabetes.diabetesjournals.org/content/67/Supplement_1/354-OR  

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Book

Altindis E. A Proteomic Approach for Bordetella pertussis. Identification of the New Immunogenic Proteins of Bordetella pertussis, the Causative Agent of Whooping Cough, by Immunoproteomics (Paperback, English). 2009, Publisher: VDM Verlag (April 26, 2009) ISBN-10: 3639141091, ISBN-13: 978-3639141092